Drill-holes co-ordinates and depths

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An under water area has been identified for its potential in yielding oil. A computerised 3D model is required to visualise the sub-surface terrain.
Sample points in this model construction contains depth and geographical co-ordinates of each point or drillhole. In a 3D modelling equation which requires requires x,y and z, depth data will be used as the z-values and x and y values are represented by the co-ordinates which I already have.